Archive for the ‘Biology’ Category

General Abnormal Patterns of Structure and Behavior (Part 0)

Tuesday, January 29th, 2013

Memory Analysis Patterns (MAPs) including memory dump, malware, software trace (TAPs), and other patterns and pattern catalogs from Software Diagnostics Institute form the very rich semantic network. Now it is possible (by using a metaphorical bijection) to create a catalog of General Patterns of Abnormal Structure and Behaviour including software, hardware, biological behavior including animal (ethology) and human behavior, sociological and historical behavior including economics, business and finance, ethics and law, and even behavior of chemical and physical systems. Such “GAPs of Structure and Behavior” may include wait chains, spikes, deadlocks, etc. We provide more specific examples in the forthcoming parts. So we are a few steps closer to realization of my old dangerous idea of a parameterized science of universal memory dumps by the so called science files or might event a general diagnostics discipline.

- Dmitry Vostokov @ DumpAnalysis.org + TraceAnalysis.org -

Facets of Systems Science

Monday, September 17th, 2012

If you liked An Introduction to General Systems Thinking book then you really need this comprehensive introduction which is more formal. Don’t be overwhelmed by the number of pages, you only need to read part 1, the first 218 pages as the rest is a collection of articles you can read selectively later on. For me one of the great features was the coverage of systems literature including some mathematical treatment books (including category theory in addition to famous Rosen’s books such as Anticipatory Systems). I also liked the discussion of critics of general systems theory that points to the fact that it should be called general systems-theory not general-systems theory. Highly recommended.

Facets of Systems Science (IFSR International Series on Systems Science and Engineering)

- Dmitry Vostokov @ LiterateScientist.com -

Debugging in 2021: Trends for the Next Decade (Part 1)

Friday, December 17th, 2010

As the new decade is approaching (2011-2020) we would like to make a few previews and predictions:

- Increased complexity of software will bring more methods from biological, social sciences and humanities in addition to existing methods of automated debugging and computer science techniques

- Focus on first fault software problem solving (when aspect)

- Focus on pattern-driven software problem solving (how aspect)

- Fusion of debugging and malware analysis into a unified structural and behavioral pattern framework

- Visual debugging, memory and software trace visualization techniques

- Software maintenance certification

- Focus on domain-driven troubleshooting and debugging tools as a service (debugware TaaS)

- Focus on security issues related to memory dumps and software traces

- New scripting languages and programming language extensions for debugging

- The maturation of the science of memory snapshots and software traces (memoretics)

Imagining is not not limited to the above and more to come and explain in the forthcoming parts.

- Dmitry Vostokov @ DumpAnalysis.org + TraceAnalysis.org -

Darwin: The Life of a Tormented Evolutionist

Thursday, July 15th, 2010

While reading evolution books ranging from popular like Darwin’s Dangerous Idea to specialized like Evolution: The First Four Billion Years and Encyclopedia of Evolution I felt the need to read Darwin’s biography. My first encounter with Darwin was even before a primary school when I was looking at illustrations to his voyages in a library. Later, during my school years in Soviet Union, I saw a movie about him. I vividly remember a Wilberforce and FitzRoy scene. So you might imaging that I was very keen to read 680 page book (not counting notes and bibliography). Unfortunately I found it a bit boring and written in a difficult language compared to other biographies I read in English. May be the language was chosen deliberately to emulate Victorian epoch?

Almost in the middle of reading this book I stumbled across another book: The Darwin Conspiracy: Origins of a Scientific Crime and reading the latter (it’s like a thriller and you can download the free PDF from www.darwin-conspiracy.co.uk) gave me an impulse to continue reading Darwin’s biography with a critical eye. Looking at the same facts your can always interpret them differently and the conspiracy book reminded me to read behind the lines more carefully and remember about politics in science and class issues in society. I’m very interested in memetic engineering Darwin used to delicately arrange and propagate his ideas. The biography mentions Wallace in passing a few times but there is no discussion about the priority and the crucial Linnean Society meeting is not in the focus and doesn’t grab any attention.

One fact I didn’t know before reading this biography is that Darwin was always sick. Now “tormented evolutionist” phrase acquires the new meaning to me. I also got the feeling that Darwin’s hesitation to publish his ideas (if he had any to publish) was caused by sickness as well. Actually the sickness was the main focus of the book. However I really wonder how could such a sick man (as described) could write that huge amount of correspondence, do research and write many books.

One quote I found at the end of the book says that Darwin would not approve anti-religious stance of Dawkins and Co.: 

“Moreover though I am a strong advocate for free thought on all subjects, yet it appears to me (whether rightly or wrongly) that direct arguments against christianity & theism produce hardly any effect on the public; & freedom of thought is best promoted by the gradual illumination of men’s minds, which follows from the advance of science. It has, therefore, been always my object to avoid writing on religion, & I have confined myself to science. I may, however, have been unduly biassed by the pain which it would give some members of my family, if I aided in any way direct attacks on religion.”

http://www.darwinproject.ac.uk/entry-12757

The quote got my attention probably because I recently read another book: The Selfish Genius.

Darwin: The Life of a Tormented Evolutionist

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- Dmitry Vostokov @ LiterateScientist.com -

The Selfish Genius

Friday, December 18th, 2009

I read this book in just one day from cover to cover. I’m not a professional biologist and learnt about evolution 25 - 30 years ago from Marxist perspective. My understanding of evolution has greatly improved this year after reading Darwin’s Dangerous Idea, This Is Biology, Breaking the Spell, Evolution: The First Four Billion Years and The 10,000 Year Explosion books. I’ve also started reading (and listening to its unabridged version on CDs simultaneously) the latest Dawkins’ book “The Greatest Show on Earth” (to be reviewed as soon as I finish) after the thought “Who’s that guy?” finally tipped. I noticed the partnership of D. Dennett and R. Dawkins when reading books and also rants from religious camps when reading reviews. So I was very keen to read the promised history of Dawkins thought in “The Selfish Genius” book and I really enjoyed it. Judged from the background knowledge I acquired while reading various books about evolution “The Selfish Genius” seems fair and balanced. Sometimes it reminded me the similar problem in Physics: String Theory vs. Others (Not Even Wrong and the Trouble With Physics). When I put “The Selfish Genius” and resumed reading “The Greatest Show on Earth” I immediately noticed a footnote on page 216 (ISBN 978-1-4165-9478-9): “epigenetics, a modish buzz-word now enjoying its fifteen minutes” and if you are curious about the source of this anger read “The Selfish Genius” book. I also like the point of the book that for different people with different backgrounds “Evolution” means different things. For me it is about evolution of software but mainly about evolution of software defects: Darwinian Debugging and I even bugtated Dawkins’ meme: Bugtation No.108.

The Selfish Genius: How Richard Dawkins Rewrote Darwin’s Legacy

- Dmitry Vostokov @ LiterateScientist.com -

Ideas and Modern Mind

Friday, August 7th, 2009

This is an encyclopedic work I bought in a local book shop and finally finished reading today. It took me a year to read from cover to cover and pages were falling out of the glue but I continued to read. Highly recommended for education and another view on human history. The review of Freud was enlightening to me because I didn’t know about the recent scholarship criticizing his work. In fact, I so liked this book that just bought it again in a hardcover version from Folio Society and start rereading it again soon.

Ideas: A History of Thought and Invention, from Fire to Freud

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The second encyclopedic book seems was written before the previous one but looks like the logical sequel to it. I’m starting reading it next week.

The Modern Mind: An Intellectual History of the 20th Century

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- Dmitry Vostokov @ LiterateScientist.com -